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题名
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2012-09-25
Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons
Proceedings of the National Academy of Sciences of the United States of America. 2012 Sep 25;109(39):15841-15846.
2012-07-04
Determinants of exon-level evolutionary rates in arabidopsis species
Evolutionary Bioinformatics. 2012 Jul 04;2012(8):389-415.
2012-07
GEMSiRV: A software platform for GEnome-scale metabolic model simulation, reconstruction and visualization
Bioinformatics. 2012 Jul;28(13):1752-1758.
2012-05
LDGIdb: A database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs
BMC Research Notes. 2012 May;5(1):Article number 212.
2012-02
Selective constraint on human pre-mRNA splicing by protein structural properties
Genome Biology and Evolution. 2012 Feb;4(9):966-975.
2012-01
Independent effects of alternative splicing and structural constraint on the evolution of mammalian coding exons
Molecular Biology and Evolution. 2012 Jan;29(1):187-193.
2011-09
MrBac: A web server for draft metabolic network reconstructions for bacteria
Bioengineered Bugs. 2011 Sep;2(5):284-287.
2011-08
The plausible reason why the length of 5' untranslated region is unrelated to organismal complexity
BMC Research Notes. 2011 Aug;4:Article number 312.
2011-07-05
Exploring the selective constraint on the sizes of insertions and deletions in 5 ' untranslated regions in mammals
BMC Evolutionary Biology. 2011 Jul 5;11(1):Article number 192.
2011-04
An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228
Journal of Bacteriology. 2011 Apr;193(7):1710-1717.
2011-01
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
BMC Systems Biology. 2011 Jan;5:Article number 8.
2010-11
Contrasting substitution patterns between HA proteins of avian and human influenza viruses: Implication for monitoring human influenza epidemics
Vaccine. 2010 Nov;28(50):7890-7896.
2010-11
Phosphorylated and nonphosphorylated serine and threonine residues evolve at different rates in mammals
Molecular Biology and Evolution. 2010 Nov;27(11):2548-2554.
2010-08
Gene family size conservation is a good indicator of evolutionary rates
Molecular Biology and Evolution. 2010 Aug;27(8):1750-1758.
2009-08
CAPIH: a Web interface for comparative analyses and visualization of host-HIV protein-protein interactions
BMC Microbiology. 2009 Aug;9:Article number 164.
2009-06
CNVVdb: A database of copy number variations across vertebrate genomes
Bioinformatics. 2009 Jun;25(11):1419-1421.
2009
Scanning for the signatures of positive selection for human-specific insertions and deletions
Genome Biology and Evolution. 2009:415-419.
2008-07
Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
Genome Research. 2008 Jul;18(7):1163-1170.
2007-09
Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation
BMC Evolutionary Biology. 2007 Sep;7:Article Number 179.
2007-07
INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events
Nucleic Acids Research. 2007 Jul;35(Suppl. S):W633-W638.
2007-07
Opposite evolutionary effects between different alternative splicing patterns
Molecular Biology and Evolution. 2007 Jul;24(7):1443-1446.
2007-03
Plant gene and alternatively spliced variant annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species
Plant Physiology. 2007 Mar;143(3):1086-1095.
2007-01
Human-specific insertions and deletions inferred from mammalian genome sequences
Genome Research. 2007 Jan;17(1):16-22.
2006-05-19
The effects of multiple features of alternatively spliced exons on the KA/KSratio test
BMC Bioinformatics. 2006 May;7: Article number 259.
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